Comparative modeling in CASP5: progress is evident, but alignment errors remain a significant hindrance.
by Venclovas C.
Affliation: Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, Livermore, California 94551, USA. venclovas@llnl.gov
Journal: Proteins. 53 Suppl 6:380-8
Publication Date: Monday, October 27, 2003
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CAFASP3: the third critical assessment of fully automated structure prediction methods.
by Fischer D, Rychlewski L, Dunbrack RL, Ortiz AR, Elofsson A.
Affliation: Bioinformatics, Department of Computer Science, Ben Gurion University, Beer-Sheva, Israel. dfischer@cs.bgu.ac.il
Journal: Proteins. 53 Suppl 6:503-16
Publication Date: Monday, October 27, 2003
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On the way to functional genomics.
by Hrkal Z.
Affliation: Department of Cellular Biochemistry, Institute of Haematology and Blood Transfusion, U Nemocnice 1, 128 20 Prague 2 Czech Republic. hrkal@uhkt.cz
Journal: Sb Lek. 104(2):217-22
Publication Date: Monday, October 27, 2003
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Human alcoholism studies of genes identified through mouse quantitative trait locus analysis.
by Ehringer MA, Thompson J, Conroy O, Goldman D, Smith TL, Schuckit MA, Sikela JM.
Affliation: Department of Pharmacology and Human Medical Genetics Program, University of Colorado Health Sciences Center, 4200 East Ninth Avenue C236, Denver, CO 80262, USA.
Journal: Addict Biol. 7(4):365-71
Publication Date: Monday, October 27, 2003
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Alternative splicing and evolution.
by Boue S, Letunic I, Bork P.
Affliation: EMBL, Heidelberg, Germany. boue@embl.de
Journal: Bioessays. 25(11):1031-4
Publication Date: Monday, October 27, 2003
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CASP5. Proceedings of the 5th Meeting on the Critical Assessment of Techniques for Protein Structure Prediction. 1-5 December 2002, Asilomar, California, USA.
by
Affliation:
Journal: Proteins. 53 Suppl 6:333-595
Publication Date: Monday, October 27, 2003
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Critical assessment of methods of protein structure prediction (CASP)-round V.
by Moult J, Fidelis K, Zemla A, Hubbard T.
Affliation: Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Rockville, Maryland 20850, USA. moult@umbi.umd.edu
Journal: Proteins. 53 Suppl 6:334-9
Publication Date: Monday, October 27, 2003
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Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes.
by de Bono B, Chothia C.
Affliation: MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. bdb@mrc-lmb.cam.ac.uk
Journal: Nucleic Acids Res. 31(21):6096-103
Publication Date: Friday, October 24, 2003
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Splice site prediction with quadratic discriminant analysis using diversity measure.
by Zhang L, Luo L.
Affliation: Laboratory of Theoretical Biophysics, Faculty of Science and Technology, Inner Mongolia University, Hohhot, 010021 China.
Journal: Nucleic Acids Res. 31(21):6214-20
Publication Date: Friday, October 24, 2003
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Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA.
by Hershkovitz E, Tannenbaum E, Howerton SB, Sheth A, Tannenbaum A, Williams LD.
Affliation: Department of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Journal: Nucleic Acids Res. 31(21):6249-57
Publication Date: Friday, October 24, 2003
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Functional modules by relating protein interaction networks and gene expression.
by Tornow S, Mewes HW.
Affliation: Institute for Bioinformatics, German National Center for Health and Environment, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany. sabine.tornow@t-online.de
Journal: Nucleic Acids Res. 31(21):6283-9
Publication Date: Friday, October 24, 2003
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Reverse vaccinology and genomics.
by Rappuoli R, Covacci A.
Affliation: IRIS, Chiron Vaccines, 53100 Siena, Italy.
Journal: Science. 302(5645):602
Publication Date: Friday, October 24, 2003
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[Comparative study of differentially expressed genes in mouse bone marrow and fetal liver cells]
by Ren AH, Zhang Y, Zhao YL, Zhao L, Liu XY, Zhao SF.
Affliation: Institute of Radiation Medicine, Academy of Military Medical Sciences, Beijing 100850, China.
Journal: Zhongguo Shi Yan Xue Ye Xue Za Zhi. 11(5):444-9
Publication Date: Friday, October 24, 2003
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[Establishment of malignant progression associated gene expression profiles in human brain glioma]
by Huang Q, Dong J, Wang AD, Shao NY, Sun JY, Li XN, Lan Q, Hu GX.
Affliation: Neurosurgical Department and Brain Tumor Research Laboratory, Second Affiliated Hospital, Suzhou University, Suzhou 215004, China.
Journal: Zhonghua Zhong Liu Za Zhi. 25(5):437-40
Publication Date: Friday, October 24, 2003
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Does tumor growth follow a "universal law"?
by Guiot C, Degiorgis PG, Delsanto PP, Gabriele P, Deisboeck TS.
Affliation: Dip. Neuroscience, Universita di Torino, C. Raffaello 30, 10125, Torino, Italy. caterina.guiot@unito.it
Journal: J Theor Biol. 225(2):147-51
Publication Date: Friday, October 24, 2003
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Tenofovir resistance and resensitization.
by Wolf K, Walter H, Beerenwinkel N, Keulen W, Kaiser R, Hoffmann D, Lengauer T, Selbig J, Vandamme AM, Korn K, Schmidt B.
Affliation: Institute of Clinical and Molecular Virology, German National Reference Centre for Retroviruses, University of Erlangen-Nuremberg, Erlangen, Germany.
Journal: Antimicrob Agents Chemother. 47(11):3478-84
Publication Date: Friday, October 24, 2003
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Immune control of tuberculosis by IFN-gamma-inducible LRG-47.
by MacMicking JD, Taylor GA, McKinney JD.
Affliation: Laboratory of Infection Biology, Rockefeller University, 1230 York Avenue, New York, NY 10021, USA. macmicj@mail.rockefeller.edu
Journal: Science. 302(5645):654-9
Publication Date: Friday, October 24, 2003
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Overexpression of a novel imprinted gene, PEG10, in human hepatocellular carcinoma and in regenerating mouse livers.
by Tsou AP, Chuang YC, Su JY, Yang CW, Liao YL, Liu WK, Chiu JH, Chou CK.
Affliation: Institute of Biotechnology in Medicine, National Yang-Ming University, Nankang, Taipei, Taiwan.
Journal: J Biomed Sci. 10(6 Pt 1):625-35
Publication Date: Friday, October 24, 2003
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Expression of the aflatoxin B1-8,9-epoxide-metabolizing murine glutathione S-transferase A3 subunit is regulated by the Nrf2 transcription factor through an antioxidant response element.
by Jowsey IR, Jiang Q, Itoh K, Yamamoto M, Hayes JD.
Affliation: Biomedical Research Centre, Ninewells Hospital and Medical School, University of Dundee, Dundee DD1 9SY, Scotland, UK. i.r.jowsey@dundee.ac.uk
Journal: Mol Pharmacol. 64(5):1018-28
Publication Date: Thursday, October 23, 2003
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In search of form and function.
by Hoag H.
Affliation:
Journal: Nature. 425(6960):880-1
Publication Date: Thursday, October 23, 2003
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