Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study.
by Wang J, Delabie J, Aasheim H, Smeland E, Myklebost O.
Affliation: Department of Tumor Biology, Norwegian Radium Hospital, N0310 Oslo, Norway. junbaiw@radium.uio.no
Journal: BMC Bioinformatics. 11 2002;3(1):36
Publication Date: Wednesday, October 29, 2003
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SeqVISTA: a graphical tool for sequence feature visualization and comparison.
by Hu Z, Frith M, Niu T, Weng Z.
Affliation: Bioinformatics Program, Boston University, Boston, MA, 02215, USA. zjhu@bu.edu
Journal: BMC Bioinformatics. 01 2003;4(1):1
Publication Date: Wednesday, October 29, 2003
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Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
by Mirkin BG, Fenner TI, Galperin MY, Koonin EV.
Affliation: School of Information Systems and Computer Science, Birkbeck College, University of London, Malet Street, London, WC1E 7HX, UK. mirkin@dcs.bbk.ac.uk
Journal: BMC Evol Biol. 01 2003;3(1):2
Publication Date: Wednesday, October 29, 2003
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The SGS3 protein involved in PTGS finds a family.
by Bateman A.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK. agb@sanger.ac.uk
Journal: BMC Bioinformatics. 3(1):21
Publication Date: Wednesday, October 29, 2003
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FunSpec: a web-based cluster interpreter for yeast.
by Robinson MD, Grigull J, Mohammad N, Hughes TR.
Affliation: Banting and Best Department of Medical Research, University of Toronto, Toronto, Canada. m.robinson@utoronto.ca
Journal: BMC Bioinformatics. 11 2002;3(1):35
Publication Date: Wednesday, October 29, 2003
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No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly.
by Jordan IK, Wolf YI, Koonin EV.
Affliation: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. jordan@ncbi.nlm.nih.gov
Journal: BMC Evol Biol. 01 2003;3(1):1
Publication Date: Wednesday, October 29, 2003
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An automated method for finding molecular complexes in large protein interaction networks.
by Bader GD, Hogue CW.
Affliation: Samuel Lunenfeld Research Institute, Mt, Sinai Hospital, Toronto ON Canada M5G 1X5, Dept, of Biochemistry, University of Toronto, Toronto ON Canada M5S 1A8. gary.bader@utoronto.ca
Journal: BMC Bioinformatics. 01 2003;4(1):2
Publication Date: Wednesday, October 29, 2003
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Genomic data sampling and its effect on classification performance assessment.
by Azuaje F.
Affliation: School of Computing and Mathematics, University of Ulster, Jordanstown, Nothern Ireland, UK. fj.azuaje@ulster.ac.uk
Journal: BMC Bioinformatics. 01 2003;4(1):5
Publication Date: Wednesday, October 29, 2003
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Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures.
by Kurowski MA, Sasin JM, Feder M, Debski J, Bujnicki JM.
Affliation: Bioinformatics Laboratory, International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, Poland. michal@genesilico.pl
Journal: BMC Bioinformatics. 03 2003;4(1):9
Publication Date: Wednesday, October 29, 2003
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Quantifying robustness of biochemical network models.
by Ma L, Iglesias PA.
Affliation: Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD USA. lma@jhu.edu
Journal: BMC Bioinformatics. 12 2002;3(1):38
Publication Date: Wednesday, October 29, 2003
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Species-specific protein sequence and fold optimizations.
by Dumontier M, Michalickova K, Hogue CW.
Affliation: Department of Biochemistry, University of Toronto, Toronto, Ontario, M5S 1A8, Canada. micheld@mshri.on.ca
Journal: BMC Bioinformatics. 12 2002;3(1):39
Publication Date: Wednesday, October 29, 2003
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Amino acid empirical contact energy definitions for fold recognition in the space of contact maps.
by Berrera M, Molinari H, Fogolari F.
Affliation: International School for Advanced Studies Via Beirut 4, 34014 Trieste, Italy. berrera@sissa.it
Journal: BMC Bioinformatics. 02 2003;4(1):8
Publication Date: Wednesday, October 29, 2003
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GapCoder automates the use of indel characters in phylogenetic analysis.
by Young ND, Healy J.
Affliation: Department of Biological Sciences, Duquesne University, Pittsburgh, PA 15219, USA. youngnd@duq.edu
Journal: BMC Bioinformatics. 02 2003;4(1):6
Publication Date: Wednesday, October 29, 2003
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Optimal step length EM algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping.
by Zhang P, Sheng H, Morabia A, Gilliam TC.
Affliation: Columbia Genome Center, Columbia University, New York NY 10032, USA. pz6@columbia.edu
Journal: BMC Bioinformatics. 01 2003;4(1):3
Publication Date: Wednesday, October 29, 2003
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Significance analysis of lexical bias in microarray data.
by Kim CC, Falkow S.
Affliation: Microbiology and Immunology, Stanford University Medical Center, Stanford, CA, 94305, USA. cckim@stanford.edu
Journal: BMC Bioinformatics. 04 2003;4(1):12
Publication Date: Wednesday, October 29, 2003
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PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine.
by Donaldson I, Martin J, de Bruijn B, Wolting C, Lay V, Tuekam B, Zhang S, Baskin B, Bader GD, Michalickova K, Pawson T, Hogue CW.
Affliation: Samuel Lunenfeld Research Institute, Toronto, M5G 1X5, Canada. ian.donaldson@utoronto.ca
Journal: BMC Bioinformatics. 03 2003;4(1):11
Publication Date: Wednesday, October 29, 2003
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Automated modelling of signal transduction networks.
by Steffen M, Petti A, Aach J, D'haeseleer P, Church G.
Affliation: Dept of Genetics, Harvard Medical School, 200 Longwood Avenue, Boston, Massachusetts, 02115, USA. steffen@rascal.med.harvard.edu
Journal: BMC Bioinformatics. 3(1):34
Publication Date: Wednesday, October 29, 2003
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Domain fusion analysis by applying relational algebra to protein sequence and domain databases.
by Truong K, Ikura M.
Affliation: Department of Medical Biophysics, University of Toronto, Toronto, M3N 1L6, Canada. ktruong@uhnres.utoronto.ca
Journal: BMC Bioinformatics. 05 2003;4(1):16
Publication Date: Wednesday, October 29, 2003
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Genome wide identification of regulatory motifs in Bacillus subtilis.
by Mwangi MM, Siggia ED.
Affliation: Center for Studies in Physics and Biology, The Rockefeller University, 1230 York Avenue, New York, NY, USA. mmm37@cornell.edu
Journal: BMC Bioinformatics. 05 2003;4(1):18
Publication Date: Wednesday, October 29, 2003
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EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance.
by Larsen TS, Krogh A.
Affliation: Center for Biological Sequence Analysis BioCentrum, Technical University of Denmark Building 208, 2800 Lyngby, Denmark. thsl@novozymes.com
Journal: BMC Bioinformatics. 06 2003;4(1):21
Publication Date: Wednesday, October 29, 2003
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