Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
by Edwards JS, Palsson BO.
Affliation: Department of Bioengineering, University of California, San Diego La Jolla, CA 92093-0412, USA. jedwards@arep.med.harvard.edu
Journal: BMC Bioinformatics. 1(1):1
Publication Date: Wednesday, October 29, 2003
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An algorithm for mapping positively selected members of quasispecies-type viruses.
by Stewart JJ, Watts P, Litwin S.
Affliation: BioGenetic Ventures, 1100 Olive Way, Suite 300, Seattle, WA 98101 jjs@alumni.princeton.edu
Journal: BMC Bioinformatics. 2(1):1
Publication Date: Wednesday, October 29, 2003
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mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships.
by Bujnicki JM, Feder M, Radlinska M, Rychlewski L.
Affliation: Bioinformatics Laboratory, International Institute of Cell and Molecular Biology, ul, ks, Trojdena 4, 02-109 Warsaw, Poland. iamb@bioinfo.pl
Journal: BMC Bioinformatics. 2(1):2
Publication Date: Wednesday, October 29, 2003
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The relationship between the L1 and L2 domains of the insulin and epidermal growth factor receptors and leucine-rich repeat modules.
by Ward CW, Garrett TP.
Affliation: CSIRO Health Sciences and Nutrition, 343 Royal Parade Parkville, Victoria 3052, Australia. Colin.Ward@hsn.csiro.au
Journal: BMC Bioinformatics. 2(1):4
Publication Date: Wednesday, October 29, 2003
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A surrogate-based approach for post-genomic partner identification.
by Pillutla RC, Hsiao K, Brissette R, Eder PS, Giordano T, Fletcher PW, Lennick M, Blume AJ, Goldstein NI.
Affliation: DGI BioTechnologies, Inc, Edison NJ, USA. pillutla@dgibt.com
Journal: BMC Biotechnol. 1(1):6
Publication Date: Wednesday, October 29, 2003
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Support vector machines for predicting protein structural class.
by Cai YD, Liu XJ, Xu X, Zhou GP.
Affliation: Shanghai Research Centre of Biotechnology, Chinese Academy of Sciences, Shanghai, 200233, China. y.cai@umist.ac.uk
Journal: BMC Bioinformatics. 2(1):3
Publication Date: Wednesday, October 29, 2003
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A study of quality measures for protein threading models.
by Cristobal S, Zemla A, Fischer D, Rychlewski L, Elofsson A.
Affliation: Cell and Molecular Biology Department, Box 596. BMC Uppsala University, SE-751 24 Uppsala, Sweden. susana.cristobal@icm.uu.se
Journal: BMC Bioinformatics. 2(1):5
Publication Date: Wednesday, October 29, 2003
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Parallel evolution of histophagy in ciliates of the genus Tetrahymena.
by Strüder-Kypke MC, Wright AD, Jerome CA, Lynn DH.
Affliation: Department of Zoology, College of Biological Science, University of Guelph, Guelph, Ontario N1G 2W1, Canada. mstruede@uoguelph.ca
Journal: BMC Evol Biol. 1(1):5
Publication Date: Wednesday, October 29, 2003
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The distributed annotation system.
by Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L.
Affliation: Howard Hughes Medical Institute and Department of Genetics, Washington University, St. Louis, MO 63110 USA. robin@genetics.wustl.edu
Journal: BMC Bioinformatics. 2(1):7
Publication Date: Wednesday, October 29, 2003
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Noncoding RNA gene detection using comparative sequence analysis.
by Rivas E, Eddy SR.
Affliation: Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, Saint Louis, Missouri, USA. elena@genetics.wustl.edu
Journal: BMC Bioinformatics. 2(1):8
Publication Date: Wednesday, October 29, 2003
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FastGroup: a program to dereplicate libraries of 16S rDNA sequences.
by Seguritan V, Rohwer F.
Affliation: Department of Computational Science San Diego State, University San Diego, California, 92182, USA. vsegurit@pacbell.net
Journal: BMC Bioinformatics. 2(1):9
Publication Date: Wednesday, October 29, 2003
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Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis.
by Zhou Y, Abagyan R.
Affliation: Genomics Institute of the Novartis Research Foundation, 3115 Merryfield Row, San Diego, CA 92121, USA. zhou@gnf.org
Journal: BMC Bioinformatics. 3(1):3
Publication Date: Wednesday, October 29, 2003
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FOUNTAIN: a JAVA open-source package to assist large sequencing projects.
by Buerstedde JM, Prill F.
Affliation: Department of Cellular Immunology, Heinrich-Pette-Institute, Martinistr 52, 20251 Hamburg, Germany. buersted@genetics.hpi.uni-hamburg.de
Journal: BMC Bioinformatics. 2(1):6
Publication Date: Wednesday, October 29, 2003
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Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes.
by Caselle M, Di Cunto F, Provero P.
Affliation: Dipartimento di Fisica Teorica, Universit di Torino, and INFN, Sezione di Torino, Torino, Italy. caselle@to.infn.it
Journal: BMC Bioinformatics. 3(1):7
Publication Date: Wednesday, October 29, 2003
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Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
by Bocs S, Danchin A, Médigue C.
Affliation: Laboratoire Génome et Informatique, Université de Versailles, 91034 Evry Cedex, France. scbocs@infobiogen.fr
Journal: BMC Bioinformatics. 3(1):5
Publication Date: Wednesday, October 29, 2003
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Universal sequence map (USM) of arbitrary discrete sequences.
by Almeida JS, Vinga S.
Affliation: Dept Biometry & Epidemiology, Medical Univ South Carolina, 135 Cannon street, Suite 303, PO Box 250835, Charleston, SC 29425, USA. almeidaj@musc.edu
Journal: BMC Bioinformatics. 3(1):6
Publication Date: Wednesday, October 29, 2003
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tacg--a grep for DNA.
by Mangalam HJ.
Affliation: tacg Informatics, 1 Whistler Ct, Irvine, CA, 92612, USA. hjm@tacgi.com
Journal: BMC Bioinformatics. 3(1):8
Publication Date: Wednesday, October 29, 2003
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An algorithm and program for finding sequence specific oligonucleotide probes for species identification.
by Pozhitkov AE, Tautz D.
Affliation: University of Cologne, Institute of Genetics, AG Tautz; Weyertal 121, D-50931 Cologne, Germany. alex.pozhitkov@uni-koeln.de
Journal: BMC Bioinformatics. 3(1):9
Publication Date: Wednesday, October 29, 2003
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Homology induction: the use of machine learning to improve sequence similarity searches.
by Karwath A, King RD.
Affliation: Department of Computer Sciences, University of Wales, Aberystwyth, SY23 3DB, UK. adk@aber.ac.uk
Journal: BMC Bioinformatics. 04 2002;3(1):11
Publication Date: Wednesday, October 29, 2003
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RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
by Bujnicki JM, Rychlewski L.
Affliation: Bioinformatics Laboratory, International Institute of Cell and Molecular Biology, ul, ks, Trojdena 4, 02-109 Warsaw, Poland. iamb@wp.pl
Journal: BMC Bioinformatics. 04 2002;3(1):10
Publication Date: Wednesday, October 29, 2003
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