Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth.
by Ibarra RU, Edwards JS, Palsson BO.
Affliation: Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0412, USA.
Journal: Nature. 420(6912):186-9
Publication Date: Thursday, November 14, 2002
PubMed citation
|
Metabolic network structure determines key aspects of functionality and regulation.
by Stelling J, Klamt S, Bettenbrock K, Schuster S, Gilles ED.
Affliation: Max Planck Institute for Dynamics of Complex Technical Systems, D-39106 Magdeburg, Germany. stelling@mpi-magdeburg.mpg.de
Journal: Nature. 420(6912):190-3
Publication Date: Thursday, November 14, 2002
PubMed citation
|
Computational systems biology.
by Kitano H.
Affliation: Sony Computer Science Laboratories, Inc., Shinagwa, Tokyo, Japan. kitano@csl.sony.co.jp
Journal: Nature. 420(6912):206-10
Publication Date: Thursday, November 14, 2002
PubMed citation
|
[Developing computer models of cellular processes]
by Nakayama Y.
Affliation: ynakayam@sfc.keio.ac.jp
Journal: Tanpakushitsu Kakusan Koso. 47(14):1956-61
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Understanding biology through intelligent systems.
by Jurisica I, Wigle DA.
Affliation: Department of Computer Science, University of Toronto, Toronto, Ontario, M5S 1A8, Canada. ij@uhnres.utoronto.ca
Journal: Genome Biol. 10 2002;3(11):reports4036
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.
by Gasch AP, Eisen MB.
Affliation: Department of Genome Science, Life Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Journal: Genome Biol. 10 2002;3(11):RESEARCH0059
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Improved analytical methods for microarray-based genome-composition analysis.
by Kim CC, Joyce EA, Chan K, Falkow S.
Affliation: Department of Microbiology and Immunology, 299 Campus Drive, Stanford University Medical Center, Stanford, CA 94305, USA. cckim@stanford.edu
Journal: Genome Biol. 10 2002;3(11):RESEARCH0065
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Finding signals that regulate alternative splicing in the post-genomic era.
by Ladd AN, Cooper TA.
Affliation: Department of Pathology, Baylor College of Medicine, Houston, TX 77030, USA. tcooper@bcm.tmc.edu
Journal: Genome Biol. 10 2002;3(11):reviews0008
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Cloning of putative odorant-degrading enzyme and integumental esterase cDNAs from the wild silkmoth, Antheraea polyphemus.
by Ishida Y, Leal WS.
Affliation: Honorary Maeda-Duffey Lab, Department of Entomology, University of California Davis, 95616, USA.
Journal: Insect Biochem Mol Biol. 32(12):1775-80
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Functional proteomic analysis of human nucleolus.
by Scherl A, Couté Y, Déon C, Callé A, Kindbeiter K, Sanchez JC, Greco A, Hochstrasser D, Diaz JJ.
Affliation: Central Clinical Chemistry Laboratory, Geneva University Hospital, 1211 Geneva 14, Switzerland.
Journal: Mol Biol Cell. 13(11):4100-9
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Paradigm shift in gene-finding method: From bench-top approach to desk-top approach (review).
by Katoh M.
Affliation: Genetics and Cell Biology Section, Genetics Division, National Cancer Center Research Institute, Chuo-ku, Tokyo 104-0045, Japan. mkatoh@ncc.go.jp
Journal: Int J Mol Med. 10(6):677-82
Publication Date: Wednesday, November 13, 2002
PubMed citation
|
Elucidation of the methylerythritol phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A metabolic milestone achieved through genomics.
by Rodríguez-Concepción M, Boronat A.
Affliation: Departament de Bioquímica i Biologia Molecular, Facultat de Química, Universitat de Barcelona, Martí i Franquès 1-7, 08028 Barcelona, Spain. mrodrigu@sun.bq.ub.es
Journal: Plant Physiol. 130(3):1079-89
Publication Date: Tuesday, November 12, 2002
PubMed citation
|
Vibrio cholerae phage K139: complete genome sequence and comparative genomics of related phages.
by Kapfhammer D, Blass J, Evers S, Reidl J.
Affliation: Zentrum für Infektionsforschung, Universität Würzburg, 97070 Würzburg, Germany.
Journal: J Bacteriol. 184(23):6592-601
Publication Date: Monday, November 11, 2002
PubMed citation
|
Characterization of new Schistosoma mansoni microsatellite loci in sequences obtained from public DNA databases and microsatellite enriched genomic libraries.
by Rodrigues NB, Loverde PT, Romanha AJ, Oliveira G.
Affliation: Centro de Pesquisas René Rachou, Fiocruz, Belo Horizonte, MG, 30190-002, Brasil.
Journal: Mem Inst Oswaldo Cruz. 97 Suppl 1:71-5
Publication Date: Monday, November 11, 2002
PubMed citation
|
New methods for the analysis of binarized BIOLOG GN data of Vibrio species: minimization of stochastic complexity and cumulative classification.
by Gyllenberg M, Koski T, Dawyndt P, Lund T, Thompson F, Austin B, Swings J.
Affliation: Department of Mathematics, University of Turku, Finland. matsgyl@utu.fi
Journal: Syst Appl Microbiol. 25(3):403-15
Publication Date: Thursday, November 07, 2002
PubMed citation
|
[Screening and analysis of early cardiopathology-related gene in type 2 diabetes mellitus]
by Zhang F, Li G, Ding W, Liu Y, Xie C, Zhang D, Zhou W, Sun W, Yang J, Luo M.
Affliation: Shanghai Institute of Endrocrinology, Ruijin Hospital, Shanghai Second Medical University, Shanghai 200025, China. fanglin@yahoo.com
Journal: Zhonghua Nei Ke Za Zhi. 41(8):530-3
Publication Date: Thursday, November 07, 2002
PubMed citation
|
In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism.
by Jamshidi N, Wiback SJ, Palsson B BØ.
Affliation: Department of Bioengineering, University of California-San Diego, La Jolla, California 92093-0412, USA.
Journal: Genome Res. 12(11):1687-92
Publication Date: Thursday, November 07, 2002
PubMed citation
|
Identification of candidate genes regulating HDL cholesterol using a chromosomal region expression array.
by Cox LA, Birnbaum S, VandeBerg JL.
Affliation: Southwest Foundation for Biomedical Research, San Antonio, Texas 78227, USA. lcox@darwin.sfbr.org
Journal: Genome Res. 12(11):1693-702
Publication Date: Thursday, November 07, 2002
PubMed citation
|
Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.
by Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G.
Affliation: Bioinformatics Unit, Centro Nacional de Investigaciones Oncologicas (CNIO), 28039, Madrid, Spain.
Journal: Genome Res. 12(11):1703-15
Publication Date: Thursday, November 07, 2002
PubMed citation
|
Genome-wide co-occurrence of promoter elements reveals a cis-regulatory cassette of rRNA transcription motifs in Saccharomyces cerevisiae.
by Sudarsanam P, Pilpel Y, Church GM.
Affliation: Department of Genetics and Lipper Center for Computational Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.
Journal: Genome Res. 12(11):1723-31
Publication Date: Thursday, November 07, 2002
PubMed citation
|
|
|
|