Long membrane helices and short loops predicted less accurately.
by Chen CP, Rost B.
Affliation: CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Journal: Protein Sci. 11(12):2766-73
Publication Date: Wednesday, November 20, 2002
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Transmembrane helix predictions revisited.
by Chen CP, Kernytsky A, Rost B.
Affliation: Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
Journal: Protein Sci. 11(12):2774-91
Publication Date: Wednesday, November 20, 2002
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Thoroughly sampling sequence space: large-scale protein design of structural ensembles.
by Larson SM, England JL, Desjarlais JR, Pande VS.
Affliation: Chemistry Department and Biophysics Program, Stanford University, California 94305, USA.
Journal: Protein Sci. 11(12):2804-13
Publication Date: Wednesday, November 20, 2002
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Rapid protein domain assignment from amino acid sequence using predicted secondary structure.
by Marsden RL, McGuffin LJ, Jones DT.
Affliation: Bioinformatics Unit, Department of Computer Science, University College London, UK.
Journal: Protein Sci. 11(12):2814-24
Publication Date: Wednesday, November 20, 2002
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Definition of the tempo of sequence diversity across an alignment and automatic identification of sequence motifs: Application to protein homologous families and superfamilies.
by May AC.
Affliation: Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, London NW7 1AA, UK. amay@nimr.mrc.ac.uk
Journal: Protein Sci. 11(12):2825-35
Publication Date: Wednesday, November 20, 2002
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Sequence conserved for subcellular localization.
by Nair R, Rost B.
Affliation: Columbia University Bioinformatics Center (CUBIC), Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
Journal: Protein Sci. 11(12):2836-47
Publication Date: Wednesday, November 20, 2002
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Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.
by de Brevern AG, Valadié H, Hazout S, Etchebest C.
Affliation: Equipe de Bioinformatique Génomique et Moléculaire (EBGM), INSERM U436, Université Denis DIDEROT-Paris 7, France. debrevern@urbb.jussieu.fr
Journal: Protein Sci. 11(12):2871-86
Publication Date: Wednesday, November 20, 2002
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Prediction of novel archaeal enzymes from sequence-derived features.
by Jensen LJ, Skovgaard M, Brunak S.
Affliation: Center for Biological Sequence Analysis, BioCentrum-DTU, The Technical University of Denmark, DK-2800 Lyngby, Denmark.
Journal: Protein Sci. 11(12):2894-8
Publication Date: Wednesday, November 20, 2002
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Prediction of partial membrane protein topologies using a consensus approach.
by Nilsson J, Persson B, Von Heijne G.
Affliation: Stockholm Bioinformatics Centre, AlbaNova, Sweden.
Journal: Protein Sci. 11(12):2974-80
Publication Date: Wednesday, November 20, 2002
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Comparative proteome bioinformatics: identification of a whole complement of putative protein tyrosine kinases in the model flowering plant Arabidopsis thaliana.
by Carpi A, Di Maira G, Vedovato M, Rossi V, Naccari T, Floriduz M, Terzi M, Filippini F.
Affliation: Department of Biology, University of Padua, Padua, Italy.
Journal: Proteomics. 2(11):1494-503
Publication Date: Wednesday, November 20, 2002
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The model B6(dom1) minor histocompatibility antigen is encoded by a mouse homolog of the yeast STT3 gene.
by McBride K, Baron C, Picard S, Martin S, Boismenu D, Bell A, Bergeron J, Perreault C.
Affliation: Department of Molecular Biology, Compatigene Inc., Montreal, Quebec, Canada.
Journal: Immunogenetics. 10 2002;54(8):562-9
Publication Date: Tuesday, November 19, 2002
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Identification of novel Mycobacterium tuberculosis antigens with potential as diagnostic reagents or subunit vaccine candidates by comparative genomics.
by Cockle PJ, Gordon SV, Lalvani A, Buddle BM, Hewinson RG, Vordermeier HM.
Affliation: TB Research Group, Department of Bacterial Diseases, Veterinary Laboratories Agency-Weybridge, New Haw, Addlestone, United Kingdom.
Journal: Infect Immun. 70(12):6996-7003
Publication Date: Tuesday, November 19, 2002
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Comparative genomics identifies the genetic islands that distinguish Neisseria meningitidis, the agent of cerebrospinal meningitis, from other Neisseria species.
by Perrin A, Bonacorsi S, Carbonnelle E, Talibi D, Dessen P, Nassif X, Tinsley C.
Affliation: INSERM U5701 Faculté de Médecine Necker, 75015 Paris, France.
Journal: Infect Immun. 70(12):7063-72
Publication Date: Tuesday, November 19, 2002
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Molecular cloning and characterization of a novel human gene (ANP32E alias LANPL) from human fetal brain.
by Jiang M, Ma Y, Ni X, Cao G, Ji C, Cheng H, Tang R, Xie Y, Mao Y.
Affliation: State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai, P.R. China.
Journal: Cytogenet Genome Res. 97(1-2):68-71
Publication Date: Tuesday, November 19, 2002
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Progress in bioinformatics and the importance of being earnest.
by Attwood TK, Miller CJ.
Affliation: School of Biological Sciences, Department of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PT, UK. attwood@bioinf.man.ac.uk
Journal: Biotechnol Annu Rev. 8:1-54
Publication Date: Tuesday, November 19, 2002
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Modeling systems biology for research and target prioritization.
by Forst CV.
Affliation:
Journal: Pharmacogenomics. 3(6):739-43
Publication Date: Tuesday, November 19, 2002
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Role of protein kinases in neuropeptide gene regulation by PACAP in chromaffin cells: a pharmacological and bioinformatic analysis.
by Hamelink C, Lee HW, Hsu CM, Eiden LE.
Affliation: Section on Molecular Neuroscience, NIMH Intramural Research Program, Bethesda, Maryland 20892, USA.
Journal: Ann N Y Acad Sci. 971:474-90
Publication Date: Tuesday, November 19, 2002
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Computing the chromaffin cell: a research-community curator/user approach to biocomputation for chromaffin cell biology.
by Eiden LE, Hirsch MD.
Affliation: Section on Molecular Neuroscience, Laboratory of Cellular and Molecular Regulation, NIMH Intramural Research Program, Bethesda, Maryland 20892, USA. eiden@codon.nih.gov
Journal: Ann N Y Acad Sci. 971:576-83
Publication Date: Tuesday, November 19, 2002
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Metabioinformatics: the ecology of an intellectual collective.
by Burgess SK.
Affliation: Cienaga Forum, Poway, California 92064, USA. burgess@remuda.org
Journal: Ann N Y Acad Sci. 971:584
Publication Date: Tuesday, November 19, 2002
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The bioinformatics of molecular interactions: what do Saccharomyces cerevisiae interaction networks tell us about human cells?
by Hogue C.
Affliation: Samuel Lunenfeld Research Institute, Toronto, Ontario, Canada M5G 1X5. hogue@mshri.on.ca
Journal: Ann N Y Acad Sci. 971:588
Publication Date: Tuesday, November 19, 2002
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