PipeOnline 2.0: automated EST processing and functional data sorting.
by Ayoubi P, Jin X, Leite S, Liu X, Martajaja J, Abduraham A, Wan Q, Yan W, Misawa E, Prade RA.
Affliation: Department of Microbiology and Molecular Genetics and. School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA.
Journal: Nucleic Acids Res. 30(21):4761-9
Publication Date: Thursday, October 31, 2002
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Bioinformatics and rational drug design: tools for discovery and better understanding of biological targets and mode of action of drugs.
by Thibaut U.
Affliation: ALTANA Pharma AG, Discovery Research, Konstanz, Germany.
Journal: Scand J Gastroenterol Suppl. (236):95-9
Publication Date: Thursday, October 31, 2002
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Development and comparison of procedures for the selection of delta ribozyme cleavage sites within the hepatitis B virus.
by Bergeron LJ, Perreault JP.
Affliation: RNA Group/Groupe ARN, Département de Biochimie, Faculté de Médecine, Université de Sherbrooke, Sherbrooke, Québec J1H 5N4, Canada.
Journal: Nucleic Acids Res. 30(21):4682-91
Publication Date: Thursday, October 31, 2002
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EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites.
by Zhang H, Ramanathan Y, Soteropoulos P, Recce ML, Tolias PP.
Affliation: Center for Applied Genomics, Public Health Research Institute, 225 Warren Street, ICPH W420M, Newark, NJ 07103, USA.
Journal: Nucleic Acids Res. 30(21):e121
Publication Date: Thursday, October 31, 2002
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Nonatomic solvent-driven Voronoi tessellation of proteins: an open tool to analyze protein folds.
by Angelov B, Sadoc JF, Jullien R, Soyer A, Mornon JP, Chomilier J.
Affliation: Laboratoire de Physique des Solides, Université Paris 11, Orsay, France.
Journal: Proteins. 49(4):446-56
Publication Date: Monday, October 28, 2002
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A new test set for validating predictions of protein-ligand interaction.
by Nissink JW, Murray C, Hartshorn M, Verdonk ML, Cole JC, Taylor R.
Affliation: Cambridge Crystallographic Data Centre, Cambridge, United Kingdom. nissink@ccdc.cam.ac.uk
Journal: Proteins. 49(4):457-71
Publication Date: Monday, October 28, 2002
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FROST: a filter-based fold recognition method.
by Marin A, Pothier J, Zimmermann K, Gibrat JF.
Affliation: Mathématique, Informatique et Génome, Centre de Recherche de Versailles, INRA, Route de St Cyr, 78026 Versailles, Cedex, France.
Journal: Proteins. 49(4):493-509
Publication Date: Monday, October 28, 2002
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Data mining the protein data bank: residue interactions.
by Oldfield TJ.
Affliation: Accelrys Inc., Department of Chemistry, University of York, Heslington, York, Yorkshire, United Kingdom. oldfield@ebi.ac.uk
Journal: Proteins. 49(4):510-28
Publication Date: Monday, October 28, 2002
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Precise mapping of recombination breakpoints suggests a common parent of two BC recombinant HIV type 1 strains circulating in China.
by McClutchan FE, Carr JK, Murphy D, Piyasirisilp S, Gao F, Hahn B, Yu XF, Beyrer C, Birx DL.
Affliation: Henry M Jackson Foundation, Rockville, Maryland 20850, USA. fmccutchan@hivresearch.org
Journal: AIDS Res Hum Retroviruses. 18(15):1135-40
Publication Date: Monday, October 28, 2002
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Catalytic mechanism of matrix metalloproteinases: two-layered ONIOM study.
by Pelmenschikov V, Siegbahn PE.
Affliation: Department of Physics, Stockholm Center for Physics, Astronomy and Biotechnology (SCFAB), Stockholm University, S-106 91 Stockholm, Sweden.
Journal: Inorg Chem. 41(22):5659-66
Publication Date: Monday, October 28, 2002
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Maternal genetic effects, exerted by genes involved in homocysteine remethylation, influence the risk of spina bifida.
by Doolin MT, Barbaux S, McDonnell M, Hoess K, Whitehead AS, Mitchell LE.
Affliation: Department of Pharmacology and Center for Pharmacogenetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Journal: Am J Hum Genet. 10 2002;71(5):1222-6
Publication Date: Friday, October 25, 2002
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Universal tumor antigens as targets for immunotherapy.
by Gordan JD, Vonderheide RH.
Affliation: Abramson Family Cancer Research Institute, University of Pennsylvania Cancer Center and Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Journal: Cytotherapy. 4(4):317-27
Publication Date: Friday, October 25, 2002
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Microarray CGH.
by Beheshti B, Park PC, Braude I, Squire JA.
Affliation: Ontario Cancer Institute, University Health Network, Department of Laboratory Medicine and Pathology, University of Toronto, Toronto, Ontario, Canada.
Journal: Methods Mol Biol. 204:191-207
Publication Date: Friday, October 25, 2002
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Analysis of the hli gene family in marine and freshwater cyanobacteria.
by Bhaya D, Dufresne A, Vaulot D, Grossman A.
Affliation: Department of Plant Biology, Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305, USA. devaki@andrew2.stanford.edu
Journal: FEMS Microbiol Lett. 215(2):209-19
Publication Date: Friday, October 25, 2002
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Evolutionary genetics. Jumbled DNA separates chimps and humans.
by Pennisi E.
Affliation:
Journal: Science. 298(5594):719-21
Publication Date: Friday, October 25, 2002
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Bioinformatics. The human genome in 3D, at your fingertips.
by Bohannon J.
Affliation:
Journal: Science. 298(5594):737
Publication Date: Friday, October 25, 2002
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Transcriptional regulatory networks in Saccharomyces cerevisiae.
by Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.
Affliation: Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA.
Journal: Science. 298(5594):799-804
Publication Date: Friday, October 25, 2002
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Esophageal cancer in Chinese population: no polymorphism in codon 149 of P21(Waf1/Cip1) cyclin dependent kinase gene.
by Xi YG, Ding KY, Ren YH, Shen Y, Ke Y.
Affliation: Laboratory of Genetics, Beijing Institute for Cancer Research, School of Oncology, Peking University, Beijing, 100034, China.
Journal: Oncogene. 21(50):7745-8
Publication Date: Friday, October 25, 2002
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[Gene-expression analysis using DNA microarrays]
by Braam GB, Bluyssen HA, Voest EE, Koomans HA.
Affliation: Afd. Nierziekten en Hypertensie, Universitair Medisch Centrum Utrecht, Postbus 85.500, 3508 GA Utrecht. g.b.braam@azu.nl
Journal: Ned Tijdschr Geneeskd. 146(40):1867-73
Publication Date: Thursday, October 24, 2002
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Factorial hidden Markov models and the generalized backfitting algorithm.
by Jacobs RA, Jiang W, Tanner MA.
Affliation: Department of Brain and Cognitive Sciences, University of Rochester, Rochester, NY 14627, USA. robbie@bcs.rochester.edu
Journal: Neural Comput. 14(10):2415-37
Publication Date: Thursday, October 24, 2002
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