PeCoP: automatic determination of persistently conserved positions in protein families.
by Friedberg I, Margalit H.
Affliation: Department of Molecular Genetics and Biotechnology, The Hebrew University--Hadassah Medical School, 91120, Jerusalem, Israel. idoerg@burnham.org
Journal: Bioinformatics. 18(9):1276-7
Publication Date: Monday, September 09, 2002
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Applications of Tree-Maps to hierarchical biological data.
by McConnell P, Johnson K, Lin S.
Affliation: Duke Bioinformatics Shared Resource, Duke University Medical Center, Durham NC 27710, USA. mccon012@mc.duke.edu
Journal: Bioinformatics. 18(9):1278-9
Publication Date: Monday, September 09, 2002
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Loopy proteins appear conserved in evolution.
by Liu J, Tan H, Rost B.
Affliation: Department of Pharmacology, Columbia University, New York, NY 10032, USA.
Journal: J Mol Biol. 322(1):53-64
Publication Date: Friday, September 06, 2002
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De novo prediction of three-dimensional structures for major protein families.
by Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D.
Affliation: Department of Biochemistry, University of Washington, Seattle, WA 98195-7350, USA.
Journal: J Mol Biol. 322(1):65-78
Publication Date: Friday, September 06, 2002
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Sequence conservation in families whose members have little or no sequence similarity: the four-helical cytokines and cytochromes.
by Hill EE, Morea V, Chothia C.
Affliation: MRC Laboratory of Molecular Biology, Cambridge, UK. emma@compbio.berkeley.edu
Journal: J Mol Biol. 322(1):205-33
Publication Date: Friday, September 06, 2002
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Computational modeling studies in sinoatrial node cells.
by Demir SS.
Affliation:
Journal: J Cardiovasc Electrophysiol. 13(8):813-5
Publication Date: Thursday, September 05, 2002
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Computational analysis of alternative splicing using EST tissue information.
by Xie H, Zhu WY, Wasserman A, Grebinskiy V, Olson A, Mintz L.
Affliation: Compugen Inc. 7 Centre Drive, Jamesburg, New Jersey 08831, USA. han@cgen.com
Journal: Genomics. 80(3):326-30
Publication Date: Thursday, September 05, 2002
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Use of class II tetramers for identification of CD4+ T cells.
by Kwok WW, Ptacek NA, Liu AW, Buckner JH.
Affliation: The Benaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, WA 98101, USA. bkwok@vmresearch.org
Journal: J Immunol Methods. 268(1):71-81
Publication Date: Thursday, September 05, 2002
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Methylation of L-trans-2,4-pyrrolidine dicarboxylate converts the glutamate transport inhibitor from a substrate to a non-substrate inhibitor.
by Esslinger C, Titus J, Koch H, Bridges R, Chamberlin A.
Affliation: COBRE Center For Structural and Functional Neuroscience, Department of Pharmaceutical Sciences, University of Montana, Missoula, MT 59812, USA. seaness@selway.umt.edu
Journal: Bioorg Med Chem. 10(11):3509-15
Publication Date: Thursday, September 05, 2002
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Tetrahydroisoquinoline-3-carboxylate based matrix-metalloproteinase inhibitors: design, synthesis and structure-activity relationship.
by Matter H, Schudok M, Schwab W, Thorwart W, Barbier D, Billen G, Haase B, Neises B, Weithmann K, Wollmann T.
Affliation: Aventis Pharma Deutschland GmbH, D-65926 Frankfurt am Main, Germany. hans.matter@aventis.com
Journal: Bioorg Med Chem. 10(11):3529-44
Publication Date: Thursday, September 05, 2002
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Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana.
by Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS.
Affliation: Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92612, USA.
Journal: Genome Res. 12(9):1305-15
Publication Date: Thursday, September 05, 2002
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GAZE: a generic framework for the integration of gene-prediction data by dynamic programming.
by Howe KL, Chothia T, Durbin R.
Affliation: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Journal: Genome Res. 12(9):1418-27
Publication Date: Thursday, September 05, 2002
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Biomic study of human myeloid leukemia cells differentiation to macrophages using DNA array, proteomic, and bioinformatic analytical methods.
by Juan HF, Lin JY, Chang WH, Wu CY, Pan TL, Tseng MJ, Khoo KH, Chen ST.
Affliation: Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.
Journal: Electrophoresis. 23(15):2490-504
Publication Date: Wednesday, September 04, 2002
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Understanding protein structure-function relationships in Family 47 alpha-1,2-mannosidases through computational docking of ligands.
by Mulakala C, Reilly PJ.
Affliation: Department of Chemical Engineering, Iowa State University, Ames, Iowa 50011-2230, USA.
Journal: Proteins. 49(1):125-34
Publication Date: Wednesday, September 04, 2002
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Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis.
by Flohil JA, Vriend G, Berendsen HJ.
Affliation: Groningen Biomolecular Sciences and Biotechnology Institute (GBB), Department of Biophysical Chemistry, University of Groningen, Groningen, The Netherlands.
Journal: Proteins. 48(4):593-604
Publication Date: Wednesday, September 04, 2002
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Progress toward virtual screening for drug side effects.
by Rockey WM, Elcock AH.
Affliation: Department of Biochemistry, University of Iowa, Iowa City, Iowa, USA.
Journal: Proteins. 48(4):664-71
Publication Date: Wednesday, September 04, 2002
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Protein domain identification and improved sequence similarity searching using PSI-BLAST.
by George RA, Heringa J.
Affliation: Division of Mathematical Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, United Kingdom.
Journal: Proteins. 48(4):672-81
Publication Date: Wednesday, September 04, 2002
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MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
by Del Carpio-Muñoz CA, Ichiishi E, Yoshimori A, Yoshikawa T.
Affliation: Laboratory for Bioinformatics, Department of Ecological Engineering, Toyohashi University of Technology, Tempaku, Toyohashi, Japan. carlos@translell.eco.tut.ac.jp
Journal: Proteins. 48(4):696-732
Publication Date: Wednesday, September 04, 2002
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Accelerated Poisson-Boltzmann calculations for static and dynamic systems.
by Luo R, David L, Gilson MK.
Affliation: Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697-3900, USA.
Journal: J Comput Chem. 23(13):1244-53
Publication Date: Wednesday, September 04, 2002
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Binding of D- and L-captopril inhibitors to metallo-beta-lactamase studied by polarizable molecular mechanics and quantum mechanics.
by Antony J, Gresh N, Olsen L, Hemmingsen L, Schofield CJ, Bauer R.
Affliation: Department of Mathematics and Physics, The Royal Veterinary and Agricultural University, DK-1871 Frederiksberg C, Denmark.
Journal: J Comput Chem. 23(13):1281-96
Publication Date: Wednesday, September 04, 2002
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