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Bioinformatics Journals and Computational Biology Journals


Bioinformatics Journals and Computational Biology Journals - September, 2002

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Genomics. After the gold rush: gene firms reinvent themselves.
by Gura T.
Affliation:
Journal: Science. 297(5589):1982-4
Publication Date: Friday, September 20, 2002
PubMed citation

Expression of WNT7A in human normal tissues and cancer, and regulation of WNT7A and WNT7B in human cancer.
by Kirikoshi H, Katoh M.
Affliation: Genetics and Cell Biology Section, Genetics Division, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Journal: Int J Oncol. 21(4):895-900
Publication Date: Thursday, September 19, 2002
PubMed citation

Expression and regulation of WNT10B in human cancer: up-regulation of WNT10B in MCF-7 cells by beta-estradiol and down-regulation of WNT10B in NT2 cells by retinoic acid.
by Kirikoshi H, Katoh M.
Affliation: Genetics and Cell Biology Section, Genetics Division, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Journal: Int J Mol Med. 10(4):507-11
Publication Date: Thursday, September 19, 2002
PubMed citation

[RadGenomics project]
by Iwakawa M, Imai T, Harada Y, Ban S, Michikawa Y, Saegusa K, Sagara M, Tsuji A, Noda S, Ishikawa A.
Affliation:
Journal: Nippon Igaku Hoshasen Gakkai Zasshi. 62(9):484-9
Publication Date: Wednesday, September 18, 2002
PubMed citation

CxxS: fold-independent redox motif revealed by genome-wide searches for thiol/disulfide oxidoreductase function.
by Fomenko DE, Gladyshev VN.
Affliation: Department of Biochemistry, University of Nebraska-Lincoln, 68588-0664, USA.
Journal: Protein Sci. 11(10):2285-96
Publication Date: Wednesday, September 18, 2002
PubMed citation

The origins of asymmetry in the folding transition states of protein L and protein G.
by Karanicolas J, Brooks CL.
Affliation: Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Journal: Protein Sci. 11(10):2351-61
Publication Date: Wednesday, September 18, 2002
PubMed citation

Molecular modeling-based analysis of interactions in the RFC-dependent clamp-loading process.
by Venclovas C, Colvin ME, Thelen MP.
Affliation: Computational and Systems Biology Division, Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, California 94550, USA. venclovas@llnl.gov
Journal: Protein Sci. 11(10):2403-16
Publication Date: Wednesday, September 18, 2002
PubMed citation

The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain.
by Baker ML, Serysheva II, Sencer S, Wu Y, Ludtke SJ, Jiang W, Hamilton SL, Chiu W.
Affliation: Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Journal: Proc Natl Acad Sci U S A. 09 2002;99(19):12155-60
Publication Date: Wednesday, September 18, 2002
PubMed citation

Vaccination with minigenes encoding V(H)-derived major histocompatibility complex class I-binding epitopes activates cytotoxic T cells that ablate autoantibody-producing B cells and inhibit lupus.
by Fan GC, Singh RR.
Affliation: Autoimmunity and Tolerance Laboratory, Division of Immunology, Department of Internal Medicine, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0563, USA.
Journal: J Exp Med. 196(6):731-41
Publication Date: Tuesday, September 17, 2002
PubMed citation

A user's guide to the human genome.
by Wolfsberg TG, Wetterstrand KA, Guyer MS, Collins FS, Baxevanis AD.
Affliation: National Human Genome Research Institute, NIH, Bethesda, Maryland 20892, USA
Journal: Nat Genet. 32 Suppl:1-79
Publication Date: Tuesday, September 17, 2002
PubMed citation

Proteomic analysis of normal human urinary proteins isolated by acetone precipitation or ultracentrifugation.
by Thongboonkerd V, McLeish KR, Arthur JM, Klein JB.
Affliation: Core Proteomics Laboratory and Molecular Signaling Group, Kidney Disease Program, Department of Medicine, University of Louisville, 570 South Preston Street, Louisville, KY 40202, USA.
Journal: Kidney Int. 62(4):1461-9
Publication Date: Tuesday, September 17, 2002
PubMed citation



The FLEXGene repository: exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era.
by Brizuela L, Richardson A, Marsischky G, Labaer J.
Affliation: Department of Biological Chemistry and Molecular Pharmacology, Institute of Proteomics, Harvard Medical School, Boston, MA 02115, USA.
Journal: Arch Med Res. 2002 Jul-Aug;33(4):318-24
Publication Date: Tuesday, September 17, 2002
PubMed citation

HMM-based databases in InterPro.
by Bateman A, Haft DH.
Affliation: Pfam Group, The Wellcome Trust Sanger Institute, Hinxton, UK.
Journal: Brief Bioinform. 3(3):236-45
Publication Date: Monday, September 16, 2002
PubMed citation

The PRINTS database: a resource for identification of protein families.
by Attwood TK.
Affliation: School of Biological Sciences, Department of Computer Science, The University of Manchester, UK. attwood@bioinf.man.ac.uk
Journal: Brief Bioinform. 3(3):252-63
Publication Date: Monday, September 16, 2002
PubMed citation

PROSITE: a documented database using patterns and profiles as motif descriptors.
by Sigrist CJ, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P.
Affliation: Swiss Institute of Bioinformatics CMU, University of Geneva. christian.sigrist@isb-sib.ch
Journal: Brief Bioinform. 3(3):265-74
Publication Date: Monday, September 16, 2002
PubMed citation

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
by O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, Apweiler R.
Affliation: EMBL Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK. odonovan@ebi.ac.uk
Journal: Brief Bioinform. 3(3):275-84
Publication Date: Monday, September 16, 2002
PubMed citation

Applications of InterPro in protein annotation and genome analysis.
by Biswas M, O'Rourke JF, Camon E, Fraser G, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.
Affliation: EBI, Hinxton, Cambridge, UK.
Journal: Brief Bioinform. 3(3):285-95
Publication Date: Monday, September 16, 2002
PubMed citation

The Bio* toolkits--a brief overview.
by Mangalam H.
Affliation: tacg Informatics, Irvine, CA 92612, USA. hjm@tacgi.com
Journal: Brief Bioinform. 3(3):296-302
Publication Date: Monday, September 16, 2002
PubMed citation

Outlier mining in high throughput screening experiments.
by Engels MF, Wouters L, Verbeeck R, Vanhoof G.
Affliation: Molecular Design and Chemoinformatics, Johnson and Johnson Pharmaceutical Research and Development, A Division of Janssen Pharmaceutica NV, Beerse, Belgium. MEngels@prdbe.jnj.com
Journal: J Biomol Screen. 7(4):341-51
Publication Date: Monday, September 16, 2002
PubMed citation

Bioinformatics for the genomic sciences and towards systems biology. Japanese activities in the post-genome era.
by Yao T.
Affliation: RIKEN Genomic Sciences Center, 1-7-22, Suehiro, Tsurumi, Yokohama 230-0045, Japan. yao@riken.go.jp
Journal: Prog Biophys Mol Biol. 2002 Jul-Aug;80(1-2):23-42
Publication Date: Monday, September 16, 2002
PubMed citation

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