ZTR: a new format for DNA sequence trace data.
by Bonfield JK, Staden R.
Affliation: MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. jkb@mrc-lmb.cam.ac.uk
Journal: Bioinformatics. 18(1):3-10
Publication Date: Monday, February 11, 2002
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A fast top-down method for constructing reliable radiation hybrid frameworks.
by Bø TH, Jonassen I, Eidhammer I, Helgesen C.
Affliation: Department of Informatics, University of Bergen, HIB, N5020 Bergen, Norway. trondb@ii.uib.no
Journal: Bioinformatics. 18(1):11-8
Publication Date: Monday, February 11, 2002
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Linear modes of gene expression determined by independent component analysis.
by Liebermeister W.
Affliation: Theoretische Biophysik, Institut für Biologie, Humboldt-Universität zu Berlin, Invalidenstrasse 42, 10115 Berlin, Germany. wolfram.liebermeister@rz-hu-berlin.de
Journal: Bioinformatics. 18(1):51-60
Publication Date: Monday, February 11, 2002
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Calculating the SNP-effective sample size from an alignment.
by Haubold B, Wiehe T.
Affliation: Max-Planck-Institut für Chemische Okologie, Carl-Zeiss-Promenade 10, D-07745 Jena, Germany.
Journal: Bioinformatics. 18(1):36-8
Publication Date: Monday, February 11, 2002
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Tumor classification by partial least squares using microarray gene expression data.
by Nguyen DV, Rocke DM.
Affliation: Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA. nguyen@wald.ucdavis.edu
Journal: Bioinformatics. 18(1):39-50
Publication Date: Monday, February 11, 2002
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Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development.
by Sásik R, Iranfar N, Hwa T, Loomis WF.
Affliation: Department of Physics Division of Biology, University of California at San Diego, La Jolla, CA 92093, USA. sasik@physics.ucsd.edu
Journal: Bioinformatics. 18(1):61-6
Publication Date: Monday, February 11, 2002
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Discrete simulation of regulatory homo- and heterodimerization in the apoptosis effector phase.
by Siehs C, Oberbauer R, Mayer G, Lukas A, Mayer B.
Affliation: Institute for Theoretical Chemistry and Molecular Structural Biology, University of Vienna, Dr Bohrgasse 9, A-1030 Vienna, Austria.
Journal: Bioinformatics. 18(1):67-76
Publication Date: Monday, February 11, 2002
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Tolerating some redundancy significantly speeds up clustering of large protein databases.
by Li W, Jaroszewski L, Godzik A.
Affliation: The Burnham Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037, USA. liwz@burnham-inst.org
Journal: Bioinformatics. 18(1):77-82
Publication Date: Monday, February 11, 2002
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Improved database searches for orthologous sequences by conditioning on outgroup sequences.
by Cotter PJ, Caffrey DR, Shields DC.
Affliation: Department of Clinical Pharmacology, Royal College of Surgeons in Ireland, 123 Stephen's Green, Dublin 2, Ireland.
Journal: Bioinformatics. 18(1):83-91
Publication Date: Monday, February 11, 2002
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Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
by Storm CE, Sonnhammer EL.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, S-171 77 Stockholm, Sweden. christian.storm@cbg.ki.se
Journal: Bioinformatics. 18(1):92-9
Publication Date: Monday, February 11, 2002
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Integrated gene and species phylogenies from unaligned whole genome protein sequences.
by Stuart GW, Moffett K, Baker S.
Affliation: Department of Life Sciences, Indiana State University, Terre Haute, IN 47809, USA. G-Stuart@indstate.edu
Journal: Bioinformatics. 18(1):100-8
Publication Date: Monday, February 11, 2002
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PathFinder: reconstruction and dynamic visualization of metabolic pathways.
by Goesmann A, Haubrock M, Meyer F, Kalinowski J, Giegerich R.
Affliation: Center for Genome Research, Department of Genetics, Bielefeld University, 33594 Bielefeld, Germany. Alexander.Goesmann@Genetik.Uni-Bielefeld.DE
Journal: Bioinformatics. 18(1):124-9
Publication Date: Monday, February 11, 2002
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The Binding Database: data management and interface design.
by Chen X, Lin Y, Liu M, Gilson MK.
Affliation: Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Journal: Bioinformatics. 18(1):130-9
Publication Date: Monday, February 11, 2002
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Concept and prototype of protein-ligand docking simulator with force feedback technology.
by Nagata H, Mizushima H, Tanaka H.
Affliation: National Cancer Center Research Institute, 5-1-1, Tsukiji, Chuo-ku, Tokyo 104-0045, Japan. hi-nagata@kddilabs.co.jp
Journal: Bioinformatics. 18(1):140-6
Publication Date: Monday, February 11, 2002
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TreeWiz: interactive exploration of huge trees.
by Rost U, Bornberg-Bauer E.
Affliation: Bioinformatics and Computational Biochemistry Group, European Media Laboratory GmbH, Schloss-Wolfsbrunnenweg 33, D-69118, Heidelberg, Germany. Ursula.Rost@eml.villa-bosch.de
Journal: Bioinformatics. 18(1):109-14
Publication Date: Monday, February 11, 2002
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A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times.
by Seo TK, Thorne JL, Hasegawa M, Kishino H.
Affliation: Department of Biosystems Science, The Graduate University for Advanced Studies, Hayama, Kanagawa, 240-0193, Japan. seo@ism.ac.jp
Journal: Bioinformatics. 18(1):115-23
Publication Date: Monday, February 11, 2002
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Classifying G-protein coupled receptors with support vector machines.
by Karchin R, Karplus K, Haussler D.
Affliation: Department of Computer Science, University of California, Santa Cruz, CA 95064, USA. rachelk@soe.ucsc.edu
Journal: Bioinformatics. 18(1):147-59
Publication Date: Monday, February 11, 2002
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Machine learning of functional class from phenotype data.
by Clare A, King RD.
Affliation: Department of Computer Science, University of Wales, Aberystwyth SY23 3DB, UK. ajc@aber.ac.uk
Journal: Bioinformatics. 18(1):160-6
Publication Date: Monday, February 11, 2002
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Prediction of 3D neighbours of molecular surface patches in proteins by artificial neural networks.
by Dietmann S, Frömmel C.
Affliation: Medical Faculty of the Humboldt University, (Charité) Institute of Biochemistry, Monbijoustr. 2A, Berlin D-10117, Germany. dietmann@ebi.ac.uk
Journal: Bioinformatics. 18(1):167-74
Publication Date: Monday, February 11, 2002
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SACS--self-maintaining database of antibody crystal structure information.
by Allcorn LC, Martin AC.
Affliation: School of Animal and Microbial Sciences, University of Reading, Whiteknights, PO Box 228, Reading RG6 6AJ, UK.
Journal: Bioinformatics. 18(1):175-81
Publication Date: Monday, February 11, 2002
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