Bayesian estimation of fold-changes in the analysis of gene expression: the PFOLD algorithm.
by Theilhaber J, Bushnell S, Jackson A, Fuchs R.
Affliation: Aventis Pharmaceuticals, Cambridge Genomics Center, 26 Landsdowne Street, Cambridge, MA 02139, USA. joachimtheilhaber@aventis.com
Journal: J Comput Biol. 8(6):585-614
Publication Date: Tuesday, December 18, 2001
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Computational complexity of multiple sequence alignment with SP-score.
by Just W.
Affliation: Department of Mathematics, College of Arts & Sciences, Morton Hall 321, Ohio University, Athens, OH 45701, USA. just@math.ohiou.edu
Journal: J Comput Biol. 8(6):615-23
Publication Date: Tuesday, December 18, 2001
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The new biology and drug research.
by Schäfer KP.
Affliation: Byk Gulden Lomberg Chemische Fabrik GmbH, Department of Molecular Biology, Byk Gulden Strasse 2, D-78467 Konstanz, Germany. klaus.schaefer@byk.de
Journal: Contrib Microbiol. 8:197-206
Publication Date: Monday, December 17, 2001
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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
by Remm M, Storm CE, Sonnhammer EL.
Affliation: Center for Genomics and Bioinformatics, Karolinska Institutet, S-17177 Stockholm, Sweden.
Journal: J Mol Biol. 314(5):1041-52
Publication Date: Monday, December 17, 2001
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Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.
by Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M.
Affliation: Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, PO Box 208114, New Haven, CT 06520-8114, USA.
Journal: J Mol Biol. 314(5):1053-66
Publication Date: Monday, December 17, 2001
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Recognition templates for predicting adenylate-binding sites in proteins.
by Zhao S, Morris GM, Olson AJ, Goodsell DS.
Affliation: Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Journal: J Mol Biol. 314(5):1245-55
Publication Date: Monday, December 17, 2001
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Evidence of reduced flexibility in disulfide bridge-depleted azurin: a molecular dynamics simulation study.
by Rizzuti B, Sportelli L, Guzzi R.
Affliation: Dipartimento di Fisica e Unit INFM, Laboratorio di Biofisica Molecolare, Universit? della Calabria, Ponte P. Bucci, Cubo 30C, 87030 Rende (CS), Italy.
Journal: Biophys Chem. 94(1-2):107-20
Publication Date: Monday, December 17, 2001
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Characterizing the metabolic phenotype: a phenotype phase plane analysis.
by Edwards JS, Ramakrishna R, Palsson BO.
Affliation: Department of Chemical Engineering, University of Delaware, Newark, Delaware 19716, USA. edwards@che.udel.edu
Journal: Biotechnol Bioeng. 77(1):27-36
Publication Date: Monday, December 17, 2001
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Can molecular mechanisms of biological processes be extracted from expression profiles? Case study: endothelial contribution to tumor-induced angiogenesis.
by Novatchkova M, Eisenhaber F.
Affliation: Research Institute of Molecular Pathology, Vienna, Rep. Austria.
Journal: Bioessays. 23(12):1159-75
Publication Date: Monday, December 17, 2001
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Browsing gene banks for Fe2S2 ferredoxins and structural modeling of 88 plant-type sequences: an analysis of fold and function.
by Bertini I, Luchinat C, Provenzani A, Rosato A, Vasos PR.
Affliation: Centro di Risonanze Magnetiche, University of Florence, Sesto Fiorentino, Italy. bertini@cerm.unifi.it
Journal: Proteins. 46(1):110-27
Publication Date: Monday, December 17, 2001
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Profile--Richard A. Mathies. Interview by Suzanne Berry.
by Mathis RA.
Affliation:
Journal: Trends Biotechnol. 20(1):44-5
Publication Date: Friday, December 14, 2001
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Bioinformatics. Reality simulation--observe while it happens.
by Berendsen HJ.
Affliation: Groningen Biomolecular Sciences and Biotechnology Institute (GBB), University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands. berendsen@chem.rug.nl
Journal: Science. 294(5550):2304-5
Publication Date: Friday, December 14, 2001
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Systematic genetic analysis with ordered arrays of yeast deletion mutants.
by Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Pagé N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, Andrews B, Tyers M, Boone C.
Affliation: Banting and Best Department of Medical Research, University of Toronto, Toronto ON, Canada M5G 1L6.
Journal: Science. 294(5550):2364-8
Publication Date: Friday, December 14, 2001
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A web-based Tree View (TV) program for the visualization of phylogenetic trees.
by Zhai Y, Tchieu J, Saier MH.
Affliation: Department of Biology, University of California at San Diego, La Jolla 92093-0116, USA.
Journal: J Mol Microbiol Biotechnol. 4(1):69-70
Publication Date: Friday, December 14, 2001
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[Knowing similarity in protein 3D structure]
by Kidera A.
Affliation: kidera@tsurumi.yokohama-cu.ac.jp
Journal: Tanpakushitsu Kakusan Koso. 46(15):2198-204
Publication Date: Thursday, December 13, 2001
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Extracting hidden information from knowledge networks.
by Maslov S, Zhang YC.
Affliation: Department of Physics, Brookhaven National Laboratory, Upton, New York 11973, USA.
Journal: Phys Rev Lett. 11 2001;87(24):248701
Publication Date: Thursday, December 13, 2001
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Strategies to identify transport systems in plants.
by Barbier-Brygoo H, Gaymard F, Rolland N, Joyard J.
Affliation: Institut des Sciences du Végétal, UPR 2355, CNRS, 91198 Gif-sur-Yvette Cedex, France. brygoo@isv.cnrs-gif.fr
Journal: Trends Plant Sci. 6(12):577-85
Publication Date: Thursday, December 13, 2001
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Foreword--MBP thematic issue on genomics.
by Doolan DL, Coppel RL, Waters AP.
Affliation:
Journal: Mol Biochem Parasitol. 118(2):127-8
Publication Date: Wednesday, December 12, 2001
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After the genome--where next?
by Burchmore R, Janssen CS, Turner CM.
Affliation: Division of Infection and Immunity, Institute of Biomedical and Life Sciences, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK.
Journal: Mol Biochem Parasitol. 118(2):129-31
Publication Date: Wednesday, December 12, 2001
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Bioinformatics and the malaria genome: facilitating access and exploitation of sequence information.
by Coppel RL.
Affliation: Department of Microbiology and the Victorian Bioinformatics Consortium, P.O. Box 53, Monash University, Melbourne, Victoria 3800, Australia. ross.coppel@med.monash.edu.au
Journal: Mol Biochem Parasitol. 118(2):139-45
Publication Date: Wednesday, December 12, 2001
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