Tandem mass spectrometry of intact proteins for characterization of biomarkers from Bacillus cereus T spores.
by Demirev PA, Ramirez J, Fenselau C.
Affliation: Department of Chemistry, University of Maryland, College Park 20742, USA. demirev@wam.umd.edu
Journal: Anal Chem. 73(23):5725-31
Publication Date: Monday, December 31, 2001
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Computing an organism: on the interface between informatic and dynamic processes.
by Hogeweg P.
Affliation: Theoretical Biology and Bioinformatics Group, Utrecht University, Padualaan 8, 3584, CH, Utrecht, The Netherlands. p.hogeweg@bio.uu.nl
Journal: Biosystems. 64(1-3):97-109
Publication Date: Friday, December 28, 2001
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Bionformation: untangling the networks of life.
by Marijuán PC.
Affliation: Fundacion CIRCE, CPS, Universidad de Zaragoza, 50015, Zaragoza, Spain. marijuan@posta.unizar.es
Journal: Biosystems. 64(1-3):111-8
Publication Date: Friday, December 28, 2001
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The brain-machine disanalogy revisited.
by Zeigler BP.
Affliation: ECE Department, Arizona Center for Integrative Modeling and Simulation, The University of Arizona, Tucson, AZ 85721, USA. zeigler@ece.arizona.edu
Journal: Biosystems. 64(1-3):127-40
Publication Date: Friday, December 28, 2001
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Roots and promises of chemical-based computing.
by Rambidi N.
Affliation: Physics Department, International Research Institute for Management Sciences, Moscow State University, 2-ya Pestchanaya-8/53, 125252, Moscow, Russia. rambidi@atom.ru
Journal: Biosystems. 64(1-3):169-78
Publication Date: Friday, December 28, 2001
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Digital and biological computing in organizations.
by Kampfner RR.
Affliation: Computer and Information Science Department, College of Engineering and Computer Science, The University of Michigan-Dearborn, Dearborn, MI 48128, USA. cis@umdsun2.umdich.edu
Journal: Biosystems. 64(1-3):179-88
Publication Date: Friday, December 28, 2001
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[A generalized chemical-kinetic method for modeling gene networks]
by Likhoshvai VA, Matushkin IuG, Ratushnyi AV, Anan'ko EA, Ignat'eva EV, Podkolodnaia OA.
Affliation: likho@bionet.nsc.ru
Journal: Mol Biol (Mosk). 2001 Nov-Dec;35(6):1072-9
Publication Date: Friday, December 28, 2001
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[Bioinformatics of genomic regulation and structure]
by Kolchanov NA.
Affliation:
Journal: Mol Biol (Mosk). 2001 Nov-Dec;35(6):931-3
Publication Date: Friday, December 28, 2001
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Identification and characterization of a novel family of mammalian ependymin-related proteins (MERPs) in hematopoietic, nonhematopoietic, and malignant tissues.
by Apostolopoulos J, Sparrow RL, McLeod JL, Collier FM, Darcy PK, Slater HR, Ngu C, Gregorio-King CC, Kirkland MA.
Affliation: Research Unit, Australian Red Cross Blood Service-Victoria, Southbank, Victoria, Australia. japostolopoulos@arcbs.redcross.org.au
Journal: DNA Cell Biol. 20(10):625-35
Publication Date: Tuesday, December 25, 2001
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CLK-1/Coq7p is a DMQ mono-oxygenase and a new member of the di-iron carboxylate protein family.
by Rea S.
Affliation: SapIENCE, Montreal, QC, Canada H2X 1X8. srea@colorado.edu
Journal: FEBS Lett. 509(3):389-94
Publication Date: Tuesday, December 25, 2001
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Prediction of organellar targeting signals.
by Emanuelsson O, von Heijne G.
Affliation: Stockholm Bioinformatics Center, Stockholm University, S-10691, Stockholm, Sweden.
Journal: Biochim Biophys Acta. 1541(1-2):114-9
Publication Date: Tuesday, December 25, 2001
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Towards computer aided design (CAD) of useful microorganisms.
by Tomita M.
Affliation:
Journal: Bioinformatics. 17(12):1091-2
Publication Date: Tuesday, December 25, 2001
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Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.
by Ray WC, Munson RS, Daniels CJ.
Affliation: Children's Research Institute, The Ohio State University, 700 Childrens Dr., Columbus, OH 43205, USA. ray@biosci.ohio-state.edu
Journal: Bioinformatics. 17(12):1105-12
Publication Date: Tuesday, December 25, 2001
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SPiD: a subtilis protein interaction database.
by Hoebeke M, Chiapello H, Noirot P, Bessières P.
Affliation: Unité Mathématique, Informatique & Génome, INRA CRV, Route de St. Cyr, F-78026 Versailles Cedex, France. hoebeke@versailles.inra.fr
Journal: Bioinformatics. 17(12):1209-12
Publication Date: Tuesday, December 25, 2001
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Heterotachy, an important process of protein evolution.
by Lopez P, Casane D, Philippe H.
Affliation: Phylogénie, Bioinformatique et Génome, CNRS, Université Pierre et Marie Curie, 9, quai St. Bernard, 75005 Paris, France.
Journal: Mol Biol Evol. 19(1):1-7
Publication Date: Tuesday, December 25, 2001
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Limitations of relative apparent synapomorphy analysis (RASA) for measuring phylogenetic signal.
by Simmons MP, Randle CP, Freudenstein JV, Wenzel JW.
Affliation: Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH, USA. psimmons@lamar.colostate.ued
Journal: Mol Biol Evol. 19(1):14-23
Publication Date: Tuesday, December 25, 2001
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Using secondary structure to identify ribosomal numts: cautionary examples from the human genome.
by Olson LE, Yoder AD.
Affliation: Department of Cell and Molecular Biology, Northwestern University Medical School, 303 E. Chicago Avenue, Chicago, IL, 60611. lolson@fmnh.org
Journal: Mol Biol Evol. 19(1):93-100
Publication Date: Tuesday, December 25, 2001
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The Molecular Biology Database Collection: 2002 update.
by Baxevanis AD.
Affliation: Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Building 50, Room 5222, Bethesda, MD 20892-8002, USA. andy@nhgri.nih.gov
Journal: Nucleic Acids Res. 30(1):1-12
Publication Date: Tuesday, December 25, 2001
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The EMBL Nucleotide Sequence Database.
by Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, Vaughan R.
Affliation: EMBL Outstation, The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Journal: Nucleic Acids Res. 30(1):21-6
Publication Date: Tuesday, December 25, 2001
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The Ensembl genome database project.
by Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M.
Affliation: The Wellcome Trust Sanger Institute and European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Journal: Nucleic Acids Res. 30(1):38-41
Publication Date: Tuesday, December 25, 2001
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